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GST billing for medical stores: rates, HSN codes and everyday billing

GST for a medical store looks simple until you meet the details: most medicines at one rate, some at nil, cosmetics at another, prices that include tax, and loose tablets. Here is how it works after the September 2025 changes.

  • Published
  • Updated
  • 3 min read
  • Milaan ERP team

Key points

  • Since 22 September 2025, most medicines are at 5% GST.
  • A list of life-saving drugs is at nil.
  • Other items you sell, like cosmetics or devices, may have different rates.
  • Medicine prices usually include GST; software must work backwards.
  • Set the rate and HSN on each item once.

GST rates in a medical store

ItemTypical rate since 22 Sept 2025
Most medicines (allopathic, ayurvedic, homeopathic)5%
Notified life-saving drugsNil
Many medical devices, diagnostic kits, glucometers5%
Corrective spectacles5%
Personal care items like soap, shampoo, toothpasteCheck the current rate for each item

Rates depend on the exact HSN code and notification. Check each item with your CA. See our GST 2.0 healthcare guide.

HSN codes

Most packaged medicines fall under HSN 3004. Devices and other items have their own codes. Set the code on each item, and the software prints it and builds the HSN summary for GSTR-1.

MRP and GST-inclusive billing

Medicine MRPs include GST. For a strip with MRP ₹105 at 5%, the taxable value is ₹100 and GST is ₹5 (₹2.50 CGST + ₹2.50 SGST for a local sale). The software works this out from the MRP.

Loose tablets

When you sell 4 tablets from a 10-tablet strip with MRP ₹105, the price is ₹42 and the GST inside it is worked out the same way. Stock goes down by 4 tablets.

B2B sales to clinics and hospitals

If you sell to a registered clinic or hospital, include their GSTIN on the bill so they can claim credit where allowed.

Returns

  • Customer returns: issue a credit note linked to the original bill.
  • Returns to distributors: make a purchase return; your input credit reduces.

Exempt items and credit

GST paid on purchases of exempt (nil-rated) drugs can’t be claimed as credit. Software should keep these sales separate, so your returns and credit stay correct.

Records to keep

  • GST invoices and credit notes.
  • Purchase bills with batches.
  • Schedule H1 register.
  • Monthly GSTR-1 and GSTR-3B data.

This post explains GST rules in simple words as we understand them on 28 Oct 2026. Rules and rates change, so please confirm with your CA or the official notifications before acting on it.

FAQ

Common questions, answered.

Short answers to the questions we hear most about this topic.

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What is the GST rate on medicines now?

Most medicines are at 5% since 22 September 2025. Notified life-saving drugs are at nil.

What is the HSN code for medicines?

Most packaged medicines fall under HSN 3004, but check the exact code for each product.

How is GST worked out from MRP?

Taxable value = MRP × 100 ÷ (100 + rate). For ₹105 at 5%, that is ₹100, with ₹5 GST.

Can I claim credit on nil-rated drugs?

No. Credit is not available on inputs used for exempt supplies.

Do I need a GSTIN on bills to clinics?

Yes, for registered buyers, so they can claim credit where allowed.

Right GST on every prescription

Milaan ERP works out GST from MRP, including loose tablets. Try it free.